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zymo spin ic columns  (Zymo Research)


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    Structured Review

    Zymo Research zymo spin ic columns
    Zymo Spin Ic Columns, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 611 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/zymo+ic+column/Zymo-Spin+IC+Columns/pm42045443-390-28-28
    Average 96 stars, based on 611 article reviews
    zymo spin ic columns - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    Incubation:

    Article Title: Direct enzymatic sequencing of 5-methylcytosine at single-base resolution.
    Article Snippet: 5-methylcytosine (5mC) is the most important DNA modification in mammalian genomes.. The ideal method for 5mC localization would be both nondestructive of DNA and direct, without requiring inference based on detection of unmodified cytosines.. Here we present direct methylation sequencing (DM-Seq), a bisulfite-free method for profiling 5mC at single-base resolution using nanogram quantities of DNA.

    Article Title: Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS
    Article Snippet: .. Then 0.8 U of Proteinase K (NEB) were added to the reaction and incubated at 50 °C for 1 h. After cooling down to room temperature, 6 μL of 3 M sodium acetate solution (pH = 4.3) and 3 μL of 10 M pyridine borane (Alfa Aesar) were added to the reaction mixture directly and incubated at 37 °C and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified with Zymo-IC column (Zymo Research) and Oligo Binding buffer (Zymo Research). .. The converted DNA was then amplified with LongAmp Hot Start Taq 2X Master Mix (NEB).

    Hood:

    Article Title: Direct enzymatic sequencing of 5-methylcytosine at single-base resolution.
    Article Snippet: 5-methylcytosine (5mC) is the most important DNA modification in mammalian genomes.. The ideal method for 5mC localization would be both nondestructive of DNA and direct, without requiring inference based on detection of unmodified cytosines.. Here we present direct methylation sequencing (DM-Seq), a bisulfite-free method for profiling 5mC at single-base resolution using nanogram quantities of DNA.

    Purification:

    Article Title: Direct enzymatic sequencing of 5-methylcytosine at single-base resolution.
    Article Snippet: 5-methylcytosine (5mC) is the most important DNA modification in mammalian genomes.. The ideal method for 5mC localization would be both nondestructive of DNA and direct, without requiring inference based on detection of unmodified cytosines.. Here we present direct methylation sequencing (DM-Seq), a bisulfite-free method for profiling 5mC at single-base resolution using nanogram quantities of DNA.

    Article Title: Genome-wide extraction of differentially methylated DNA regions using adapter-anchored proximity primers
    Article Snippet: Oxidized DNA was then reduced in a 50 μl reaction containing 100 mM sodium acetate solution (pH=4.0) and 100 mM pic-borane (Alfa Aesar) for 6 hours at 37 °C and 850 rpm in the Eppendorf ThermoMixer. .. The product was purified by Zymo-IC column with Oligo Binding Buffer (Catalog No. D4060, ZYMO Research). .. For both EM-Seq and TAPS-converted libraries, pre-amplification was performed using NEBNext Q5U Master Mix (Catalog No. M0597) with primers targeting the adapters (Supplementary Table 1) for 8 cycles, following the manufacturer’s protocol.

    Article Title: Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS
    Article Snippet: .. Then 0.8 U of Proteinase K (NEB) were added to the reaction and incubated at 50 °C for 1 h. After cooling down to room temperature, 6 μL of 3 M sodium acetate solution (pH = 4.3) and 3 μL of 10 M pyridine borane (Alfa Aesar) were added to the reaction mixture directly and incubated at 37 °C and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified with Zymo-IC column (Zymo Research) and Oligo Binding buffer (Zymo Research). .. The converted DNA was then amplified with LongAmp Hot Start Taq 2X Master Mix (NEB).

    Binding Assay:

    Article Title: Direct enzymatic sequencing of 5-methylcytosine at single-base resolution.
    Article Snippet: 5-methylcytosine (5mC) is the most important DNA modification in mammalian genomes.. The ideal method for 5mC localization would be both nondestructive of DNA and direct, without requiring inference based on detection of unmodified cytosines.. Here we present direct methylation sequencing (DM-Seq), a bisulfite-free method for profiling 5mC at single-base resolution using nanogram quantities of DNA.

    Article Title: Genome-wide extraction of differentially methylated DNA regions using adapter-anchored proximity primers
    Article Snippet: Oxidized DNA was then reduced in a 50 μl reaction containing 100 mM sodium acetate solution (pH=4.0) and 100 mM pic-borane (Alfa Aesar) for 6 hours at 37 °C and 850 rpm in the Eppendorf ThermoMixer. .. The product was purified by Zymo-IC column with Oligo Binding Buffer (Catalog No. D4060, ZYMO Research). .. For both EM-Seq and TAPS-converted libraries, pre-amplification was performed using NEBNext Q5U Master Mix (Catalog No. M0597) with primers targeting the adapters (Supplementary Table 1) for 8 cycles, following the manufacturer’s protocol.

    Article Title: Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS
    Article Snippet: .. Then 0.8 U of Proteinase K (NEB) were added to the reaction and incubated at 50 °C for 1 h. After cooling down to room temperature, 6 μL of 3 M sodium acetate solution (pH = 4.3) and 3 μL of 10 M pyridine borane (Alfa Aesar) were added to the reaction mixture directly and incubated at 37 °C and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified with Zymo-IC column (Zymo Research) and Oligo Binding buffer (Zymo Research). .. The converted DNA was then amplified with LongAmp Hot Start Taq 2X Master Mix (NEB).

    other:

    Article Title: Engineering a Novel Polymerase and Technology Development for the Discovery of Threose Nucleic Acid Aptamers
    Article Snippet: The corresponding band was excised and dissolved with Zymo agarose dissolving buffer (100 mg of agarose to 300 μL Zymo agarose dissolving buffer) by incubating at 37°C for 1 h. Dissolved solution was loaded into a Zymo IC column and spun at 14,000 rcf for 30 sec. DNA wash buffer (500 μL) was added to the 107 column, mixed by inversion, and removed.



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